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Program (Tentative)
E:English J:Japanese

November 8 (1st day)
　 Main Hall (301) Sub Hall-1 (401) Sub Hall-2 (402)
　 Registration and information desk open
«Opening Remarks»        
10:00-10:20 Opening Remarks 　   　   　
«Keynote»        
10:20-11:10 K-01: Kimihiko Hirao (RIKEN)
"The K Supercomputer and Recent Advances in DFT"
  Chair: Shigenori Tanaka (Kobe Univ.)		 E   　   　
11:10-12:00 K-02: Thom Dunning（Univ. of Illinois）
"Future of High Performance Computing"
  Chair: Hiroshi Chuman(Tokushima Univ.)		 E　   　   　
<Luncheon Seminar 1>
Patcore Inc. 		 <Poster Session 1: odds#, at poster session room>
12:30-13:30    
«HPC (High Performance Computational Chemistry)»  Chair: Yukihiro Eguchi(RIKEN) «JSBi Oral Session 1-1»
 14:00-15:28		 «Sponsored Session»
geneXplain GmbH
14:00-14:30 I-01: Shinichi Morishita (The Univ. of Tokyo)
"High performance computing for personal genomes and DNA chromatin structure"		 J 14:00- 
(JSBi-25)Wataru Iwasaki (Univ. of Tokyo)
"TogoDoc server/client system: smart recommendation and efficient management of life science literature"
14:22- 
(JSBi-32)Yasumasa Shigemoto (NIG)
"Knowledgebase of influenza virus by DDBJ RDF"
14:44- 
(JSBi1-48)Chie Motono (CBRC)
"SAHG, a comprehensive database of predicted structures of all human proteins, and structure prediction pipeline for eukaryotic proteins"
15:06-  
(JSBi-55)Kana Shimizu(CBRC)
"Privacy preserving search for chemical compound libraries"		 E Edgar Wingender (Goettingen Univ.)
14:00-14:30 
"Efficient large-scale screening of chemical structures for potential biological activities"
14:30-15:00 
"The geneXplain platform: from functional genome analysis to biological process simulation"
15:00-15:30 
"One out of 24 million: How to computationally identify a new candidate drug against breast cancer"		 E
14:30-15:00 I-02: Hideaki Fujitani (The Univ. of Tokyo)
"Massively Parallel Computation of Binding Free Energy for Drug Development" 		J
15:00-15:30 I-03: Seiryo Sugiura (The Univ. of Tokyo)
"Multi-scale heart simulator based on the molecular mechanisms of cardiac function"		 J
«Biosystem Dynamics»  Chair: Makoto Taiji (RIKEN) «JSBi Oral Session 1-2»
 16:00-17:06 		 «Sponsored Session»
PDBj (Protein Data Bank Japan) 
16:00-16:30 I-04: Toshio Yanagida (RIKEN)
"Fluctuation and the function of life"		 J　 16:00- 
(JSBi-15)Mihoko Saito(Nagahama Institute of Bioscience and Technology)
"Classification of PDB ligands with fast graph matching algorithm"
16:22- 
(JSBi-26) Hajime Hanawa (Waseda University)
"Analysis of intrinsically disordered proteins based on molecular evolution"
16:44- 
(JSBi-36)Yoichi Murakami(National Institute of Biomedical Innovation)
"Exhaustive comparison of representative partial surfaces of ligand binding sites in proteins"		 E "Biological and Chemical Databases: Application and Integration"
Organizer: Haruki Nakamura (Osaka Univ.)

16:00-16:30 
Akira R. Kinjo (Osaka Univ.)
"Protein Data Bank on the Semantic Web"
16:30-17:00 
Kengo Kinoshita (Tohoku Univ.)
"COXPRESdb: A database of gene coexpression in seven model animals"
17:00-17:30 
Takeshi Kawabata (Osaka Univ.)
"KCOMBU: a chemical structure comparison tool using the build-up MCS algorithm"

 E
16:30-17:00 I-05: Takaharu Mori (RIKEN)
"Molecular dynamics simulations of membrane proteins"		 J
17:00-17:30 I-06: Tatsuo Shibata (RIKEN)
"Inherent polarity and gradient sensing of the self-organized signaling system in chemotactic cells"		 J
 

November 9 (2nd day)
　 Main Hall (301) Sub Hall-1 (401) Sub Hall-2 (402)
«Keynote»        
9:30-10:20 K-03: Mitsuaki Ohtani (Shionogi & Co., Ltd.)
"Concerted Collaboration of Chem-Bio Informatics and Medicinal Chemistry for Innovative Drug Discovery"
  Chair: Tsuneaki Sakata (Osaka Univ.)		 J   　   　
10:20-11:10 K-04: Thierry Langer (Prestwick Chem.,Inc.)
"Feature-based Pharmacophore Models for Bio-Activity Profiling: An Interesting Concept for Efficient Lead Optimization"
  Chair: Akihiko Konagaya (Tokyo Institute of Technology)		 E   　   　
11:10-12:00 K-05: Ross King (Aberystwyth Univ.)
"Automating Biology using Robot Scientists"
  Chair: Tatsuya Akutsu (Kyoto Univ.)		 E   　   　
<Luncheon Seminar 2>
Elsevier Japan KK
 <Poster Session 2: even#, at poster session room>
12:30-13:30 Dr. Jochen Tannemann (Elsevier Information Systems GmbH, Sr. Sales Development Manager)  
«In silico Drug Discovery» Chair: Takatsugu Hirokawa(AIST) «JSBi Oral Session 2-1»
 14:00-15:28		 «Sponsored Session»
Hitachi Solutions, Ltd.
14:00-14:30 I-07: Kenji Mizuguchi (National Institute of Biomedical Innovation)
"Candidate gene prioritization and validation using the TargetMine integrated data warehouse"		 　 14:00- 
(JSBi-12)Edward Wijaya (Univ. of Tokyo)
"Protein-coding based assembly of metagenomic next-generation sequencing data"
14:22- 
(JSBi-27)Daisuke Ueta (Osaka Univ.)
"Mutation-aware clustering with error correction for short-read genome mapping"
14:44- 
(JSBi-39)Masahiro Hamano (Japan Science and Technology Agency)
"Kinetic simulations of RNA-interference: primer dependent and independent synthesis of dsRNA"
15:06- 
(JSBi-47)Wataru Fujibuchi (Computational Biology Research Center)
"Prediction of chemical toxicity by network-based SVM on ES-cell validation system"		 E 14:00-15:00
Ken Kurokawa(Tokyo Institute of Technology)
15:00-15:30
Trevor Wagner(OpGen, Inc.)
"Optical Mapping:Innovative platform for whole genome analysis"		  
14:30-15:00 I-08: Yoshifumi Fukunishi (AIST-BIRC)
"Protein-compound docking, in-silico screening and related topics"		  
15:00-15:30 I-09: Yutaka Akiyama (Tokyo Institute of Technology)
"Prediction of Drug Clearance Pathway with Machine Learning"		  
«Pharmacokinetics»  Chair: Takashi Mizuma (Tokyo Univ. of Pharmacy and Life Science ) «JSBi Oral Session 2-2»
 16:00-17:28		 «Kobe citizens open lecture»
"Next Generation Supercomputer 'K' for Healthcare and life science!!"
16:00-16:10 I-10: Takashi Mizuma (Tokyo Univ. of Pharmacy and Life Science) J 16:00- 
(JSBi-3)Kazuhiro Takemoto (Japan Science and Technology Agency)
"Estimating metabolic network robustness using branching process approximation"
16:22- 
(JSBi-42)Mitsunori Kayano (Univ. of Tokyo)
"A partial correlation approach for estimating metabolic networks from multi-omics data"
16:44- 
(JSBi-62)Edgar Wingender (Goettingen Univ.)
"Seed sites" constitute a reliably predictable core transcription network
17:06-
(JSBi-13)Kentaro Inoue(Kyushu Institute of Technology)
 Hybrid grid layout algorithm for biochemical network maps 		E Yukihiro Eguchi (RIKEN)
Tsuneaki Sakata (Osaka Univ.)
Taishin Nomura (Osaka Univ.)		  
16:10-16:50 I-11: Akira Yamamoto (Kyoto Pharmaceutical Univ.)
"Improvement of intestinal and transmucosal absoption of peptide and protein drugs"		 J
16:50-17:30 I-12: Toshiharu Horie (Chiba Univ.)
"Pharmacokinetics and hepatotoxicity due to the oxidative stress"		 J
18:00～   Banquet (at Reception Hall)　　　　　
 

November 10 (3rd day)
　 Main Hall (301) Sub Hall-1 (401) Sub Hall-2 (402)
«Open Innovation»  Chair: Tsuneaki Sakata (Osaka Univ.) «JSBi Oral Session 3-1»
 9:00-10:28 		«Sponsored Session»
PerkinElmer Co., Ltd.
9:00-9:30 I-13: Yayoi Matsumoto (Shionogi & Co., Ltd.)
"Open innovation of pharmaceutical industry"		 J　 9:00- 
(JSBi-8)Shuhei Kaneko (Tokyo Univ. of Science)
"Gene selection using a high-dimensional Cox model in microarray data analysis"
9:22- 
(JSBi-46)Sung-Joon Park (Univ. of Tokyo)
"Transcriptome analysis of mouse early embryo development by RNA sequencing
9:44-
(JSBi-2)Yoshihiko Hasegawa (Univ. of Tokyo)
Analysis of positive feedback in genetic oscillators"
10:06- 
(JSBi-14)Daniel Berrar (Tokyo Institute of Technology)
"The area under the ROC curve: an incoherent performance measure for biomedical classifiers"		 E 9:00-9:50
Toshio Maruo
PerkinElmer E-Notebook
9:50-10:05
Hideki Shimizu
Powerful and Essential Drawing Tool for research environment
10:05-10:30
Ryo Shioda
Columbus™ Image Data Management and Analysis System 		 
9:30-10:00 I-14: Yoshiaki Tsukamoto (Japan Bioindustry Association)
"Promotion of Open-innovation by Asian Cooperation"		 J
10:00-10:30 I-15: Takafumi Yamamoto (TODAI TLO, Ltd.)
"University Industry collaboration will encourage open-innovation"		 J
«Translational Research»  Chair: Hiroshi Tanaka (Tokyo Medical and Dental Univ.) «JSBi Oral Session 3-2»
 10:40-11:46		 «Oral Session»
10:40-11:10 I-16: Hiroshi Tanaka (Tokyo Medical and Dental Univ.)
"Disease systems biology-Present status and future"		 J 10:40- 
(JSBi-20)Kengo Sato (Keio Univ.)
"Simultaneous aligning and folding of RNA sequences by dual decomposition"
11:02- 
(JSBi-50)Hiroaki Iwata (Kyoto Univ.)
"Evaluation of spliced alignment programs using cross-species benchmark datasets"
11:24- 
(JSBi-58)Yoshinori Fukasawa (Univ. of Tokyo)
"MoiraiSP: a novel mitochondrial cleavage site predictor"		 E "Interface between experiment and theory in nuclear receptor research"
Organizer:Shigenori Tanaka (Kobe Univ.)

10:40-11:10
Mitsuko Ishihara-Sugano (Res. & Dev. Center, Toshiba Corp.),  Satoshi Miyagi (Toyohashi Univ. of Tech.)
"Specific Interactions Between AhR and Dioxin: Experiment and Simulation"
11:10-11:40
Ayami Matsushima, Yasuyuki Shimohigashi (Risk Sci. Res. Center, Kyushu Univ.)
"Regional Ligand-Receptor CH/π Interactions Induce Best Fittings for Receptor Activation"
11:40-12:10
Kaori Fukuzawa(Mizuho Info. & Res. Inst. Inc.)
"Mechanism of Transcriptional Regulation by Nuclear Receptors: Fragment Molecular Orbital Study"		 J
11:10-11:40 I-17: Akira Nakagawara (Chiba Cancer Center Res. Inst.)
"Drug discovery of cancer according to the molecular imaging by World Community Grid"		 J
11:40-12:10 I-18: Toru Suzuki (The Univ. of Tokyo)
"Clinical application of the proteome with focus on development of cardiovascular biomarkers – challenges in translational medicine"		 J
12:10-12:30  «Poster Award (CBI & JSBi)»   　   　
<Luncheon Seminar 3>
World Fusion Co.,LTD.
 
12:30-13:30 "Cutting edge knowledge system： Evolution of LSKB"
Kozo Kawahara
"LSKB; NGS annotation management system"
Atsushi Midorikawa
"Lead exploration by combination of Knowledge and structural design function." 		   
«Special Lecture»        
14:00-14:50 I-19: Osamu Gotoh (Kyoto Univ.)
"Sequence alignment: retrospective and perspective"
  Chair: 		 J 　 　 　 　
14:50-15:40 I-20: Minoru Kanehisa (Kyoto Univ.)
"Bioinformatics as intellectual property rights"
  Chair: 		 J   　   　
15:40-16:30 I-21: Tsuguchika Kaminuma (Institute for Cyber Associates)
"CBI Towards 2040: New Research and Job Frontiers"
  Chair: 		 J   　   　
«Closing Remarks»        
16:30-17:00 Closing Remarks